Scaffold Ga0211490_1013290

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211490_1013290

Scaffold Ga0211490_1013290

Overview

Basic Information
Taxon OID	3300020297 Open in IMG/M
Scaffold ID	Ga0211490_1013290 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1716
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_065
Coordinates	Lat. (^o)	-35.2087	Long. (^o)	26.2932	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033076	Metagenome	178	Y
F060048	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211490_10132902	F033076	AGGAGG	MNYNEIRRLYDNVDNDELVTQTAYEFKLFDDYYYQLFYSYSELNSEVNS
Ga0211490_10132903	F060048	GAGG	MNNNLLENVNVLSEHYVNRFKFLLEGEMLNLQVKRHQDAYSIMQEYLCNGEVEKDDYQWFYVNYQFKLQEEK

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