NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211530_1031041

Scaffold Ga0211530_1031041


Overview

Basic Information
Taxon OID3300020295 Open in IMG/M
Scaffold IDGa0211530_1031041 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000071 (ERX555980-ERR599109)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)958
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)18.9918Long. (o)64.5757Alt. (m)Depth (m)340
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042382Metagenome / Metatranscriptome158N
F055788Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0211530_10310413F055788AGAAGMIKFMLIFQICYSVAGTCFPPMNEQLYSSHRECALNGYYKAHEFMAKMPVEQVESNRTFIKFWCVPKKQIEENEKKVDT
Ga0211530_10310414F042382N/AMKKKSIPKFESKVSMDVICYKLAEIHKDVQKNSKDIESLKHQMSMGKGGIKAIFVVGSLIALMVGVLKFVK

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