NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1010999

Scaffold Ga0211520_1010999


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1010999 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1481
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014465Metagenome263Y
F024106Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0211520_10109992F014465AGGAGMKLRGMTMIGALVRDCSMIMKIVTGYKCSNRGEYIQFAGDHETAWYPLDSFEILSTED
Ga0211520_10109993F024106GGAMQHHGFQVGDLVTLKHHPGAPIAVVVSLDAMVFDRIQIQFFDTDRPEMAAPGHWKVVSRNENRPEDR

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