Basic Information | |
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Taxon OID | 3300020294 Open in IMG/M |
Scaffold ID | Ga0211520_1001086 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5540 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_025 | |||||||
Coordinates | Lat. (o) | 39.3757 | Long. (o) | 19.4167 | Alt. (m) | Depth (m) | 50 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017147 | Metagenome / Metatranscriptome | 242 | N |
F020191 | Metagenome / Metatranscriptome | 225 | N |
F074760 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211520_10010863 | F020191 | N/A | MPKLENIKSLYQSSAYRDILHDINGVVFPFDSQWKNIGISVSGGADSALMSVLLCSIISQLNAETNVHIITNTRCWKTRPWQRHNSLEVFAWLTNAFPSIQFKRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRAHAEYVAHTEKLDAWYCGVTKNPDKEFDGRLVARDIEDATLDRLIKTHMGGLACHPFTYVQKDWIVAQFKKLGIMDLFSLTRSCEGDNETYPEVFGDLDYKTYVPGTPVPVCGKCFWCKEREWGVSKCQD |
Ga0211520_10010864 | F074760 | N/A | MLQKLDTKTDSKILFDLVKHLPEGKNVLNRPTGNFFYDAWEVLPEYKGTAIEDLLKQLPDHGEARVIIMKPGESYSAHADIDDRYHVTLDAEQSFLHDIENEMMYSTKPDNTVYLMNAGLLHSASNYGYKNRYQLVVRKRLQHNTMMNDPRQVVMTSTDPVYNLRYLFDSSFSILLNKMAKEKQIDSFARINETKIKFLCEGSKINELLKMQQICGFKIDIVYA |
Ga0211520_10010865 | F017147 | N/A | MLDWNNFYKYKQGLAVANMLYQPLVHKDNTAFCMNWNANNYFVNESMTDDLYNFWFNKEVEYINKLKDKKYIPEIIDIDTTTRQIKFKWYGKSLNAMIENNQIDSIPDWKNKIKTIKEDLEQQNIFKINMYPHTFYFDDNNEAHIMDLYGCTDTASRYLDIKYLKPLIRNNRFDKFIVNDQLDTHELYNETIKTNYAEWPGDFLNA |
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