NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211520_1001086

Scaffold Ga0211520_1001086


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1001086 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5540
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N
F074760Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0211520_10010863F020191N/AMPKLENIKSLYQSSAYRDILHDINGVVFPFDSQWKNIGISVSGGADSALMSVLLCSIISQLNAETNVHIITNTRCWKTRPWQRHNSLEVFAWLTNAFPSIQFKRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRAHAEYVAHTEKLDAWYCGVTKNPDKEFDGRLVARDIEDATLDRLIKTHMGGLACHPFTYVQKDWIVAQFKKLGIMDLFSLTRSCEGDNETYPEVFGDLDYKTYVPGTPVPVCGKCFWCKEREWGVSKCQD
Ga0211520_10010864F074760N/AMLQKLDTKTDSKILFDLVKHLPEGKNVLNRPTGNFFYDAWEVLPEYKGTAIEDLLKQLPDHGEARVIIMKPGESYSAHADIDDRYHVTLDAEQSFLHDIENEMMYSTKPDNTVYLMNAGLLHSASNYGYKNRYQLVVRKRLQHNTMMNDPRQVVMTSTDPVYNLRYLFDSSFSILLNKMAKEKQIDSFARINETKIKFLCEGSKINELLKMQQICGFKIDIVYA
Ga0211520_10010865F017147N/AMLDWNNFYKYKQGLAVANMLYQPLVHKDNTAFCMNWNANNYFVNESMTDDLYNFWFNKEVEYINKLKDKKYIPEIIDIDTTTRQIKFKWYGKSLNAMIENNQIDSIPDWKNKIKTIKEDLEQQNIFKINMYPHTFYFDDNNEAHIMDLYGCTDTASRYLDIKYLKPLIRNNRFDKFIVNDQLDTHELYNETIKTNYAEWPGDFLNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.