Scaffold Ga0211524_1002353

Overview

Basic Information

• Taxon OID: 3300020291
• Scaffold ID: Ga0211524_1002353
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4708
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_037
• Coordinates
  • Lat. (^o): 20.8188
  • Long. (^o): 63.6158
  • Depth (m): 600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F013228	Metagenome / Metatranscriptome	273	Y
F092696	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211524_100235311	F013228	GGAG	MSISVQSDGSSLETTVSVKSGRKKLYENKATVVEAFKEKHIKVDLVDEDDHYFKLNWDGGKYVGNFFGTTLTCEYEVSRDFKAEISTPNKNESSATVYAKRSNGGRPHRYK
Ga0211524_10023532	F092696	AGGAG	MKYILFVMITVFLETGEPIEHKFSLTFDNDKRCAEFKKVIDVGVSFFRLANDNGSEIDYSGNCKEVVISKKRSL
Ga0211524_10023534	F004418	GAGG	MKSWWLDDWENNRFRLFCETIGSLCFISIYVLMAWYGEAVSIFTIFLVQIVGSSLHIINAYMRNSVNLIVLNVVVITIAIFGIGRMFL