Scaffold Ga0211591_1040015

Overview

Basic Information

• Taxon OID: 3300020280
• Scaffold ID: Ga0211591_1040015
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.895
  • Long. (^o): -142.6228
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211591_10400151	F003693	AGG	MIKSKLALIDISADNNNSLGVQTEGMLLCGVEFPAAMTGTAVTFDFSMDNSTFVDVKETDGTDVSYTVSAGDVVRVDPSGWAFASNGFLRVTSNGNEAADRKIILHFRHS
Ga0211591_10400152	F092017	AGGAG	MGMLLILKEGRNLDIESIPDQPLEPSFPIVNPDIKANDGLFALGAFGQAIFAAELVEEGA