Scaffold Ga0211591_1000055

Overview

Basic Information

• Taxon OID: 3300020280
• Scaffold ID: Ga0211591_1000055
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44008
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (46.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.895
  • Long. (^o): -142.6228
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020526	Metagenome / Metatranscriptome	223	Y
F025996	Metagenome	199	Y
F039094	Metagenome / Metatranscriptome	164	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211591_100005537	F082531	N/A	MNDQDIEQFIKAFDDFMQHAETEIDAHQKWKEAEEYTNQFFEERAAELEVTVDYYMQEFV
Ga0211591_100005538	F039094	GAG	MTQEKKVSLNVQEIGVLLSALQLLDHSDEHHIAKHYGSAPSLYNRLKEIYDGMDSSICGIEVDPICEPSF
Ga0211591_100005540	F025996	N/A	MGTVSTRIAGGLMMTPQLEMHIGELDKSIIALSKRKLKLLQEVNDINETISFLRQQQEDLSNV
Ga0211591_100005545	F020526	AGG	MTDFTDDQRVEMIENQCEHIISLCETYVEGDTLKDVGNIRALYEEYGEWLDTYNAVEGAPEEYITAWAPNLLDCAS