NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211591_1000055

Scaffold Ga0211591_1000055


Overview

Basic Information
Taxon OID3300020280 Open in IMG/M
Scaffold IDGa0211591_1000055 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44008
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (46.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020526Metagenome / Metatranscriptome223Y
F025996Metagenome199Y
F039094Metagenome / Metatranscriptome164Y
F082531Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211591_100005537F082531N/AMNDQDIEQFIKAFDDFMQHAETEIDAHQKWKEAEEYTNQFFEERAAELEVTVDYYMQEFV
Ga0211591_100005538F039094GAGMTQEKKVSLNVQEIGVLLSALQLLDHSDEHHIAKHYGSAPSLYNRLKEIYDGMDSSICGIEVDPICEPSF
Ga0211591_100005540F025996N/AMGTVSTRIAGGLMMTPQLEMHIGELDKSIIALSKRKLKLLQEVNDINETISFLRQQQEDLSNV
Ga0211591_100005545F020526AGGMTDFTDDQRVEMIENQCEHIISLCETYVEGDTLKDVGNIRALYEEYGEWLDTYNAVEGAPEEYITAWAPNLLDCAS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.