NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211658_1012139

Scaffold Ga0211658_1012139


Overview

Basic Information
Taxon OID3300020274 Open in IMG/M
Scaffold IDGa0211658_1012139 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2034
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211658_10121392F033761GGAGMAQINNHEFYGLDTAYVEKHKELFDFFESQNLDVEINDDFIELKNILTSKDKDDYAYKFDPAFETYLDKATGFVLYLRYNNDIVATYAAKKLSLQTFIKEMKLVYPGNYETINDFEGKQAYSSCQWVSKEHRGKKWGRVLDHLKKNICFDLMKCDTNFAIHKSDLRDYHVNHLAYSNNKKLAVIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEVKTLYT
Ga0211658_10121393F032309GGAMRTETKEFFDYTKSLPFKDITHFWDIPYKQMLDEVKSVDEKYWRRPFDADNNQIDRMKLDDSESVNHYPGLKGDLVEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKQFRQLVMENK
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