Scaffold Ga0211658_1004196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211658_1004196

Scaffold Ga0211658_1004196

Overview

Basic Information
Taxon OID	3300020274 Open in IMG/M
Scaffold ID	Ga0211658_1004196 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3745
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (17.65%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002336	Metagenome / Metatranscriptome	569	Y
F019142	Metagenome / Metatranscriptome	231	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_100419612	F002336	N/A	MPTVKSKNMTRTFPYNAVGKAQADSFAKMKKGKIKYNPGYGMEKKTQSGY
Ga0211658_10041964	F019142	N/A	MKKLGAWLIKTSHTIARWWGNLTHKIKCNWNNIIFAISFKMKDCKKEECICIK

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