Scaffold Ga0211566_1010435

Overview

Basic Information

• Taxon OID: 3300020272
• Scaffold ID: Ga0211566_1010435
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.1468
  • Long. (^o): -116.6821
  • Depth (m): 375

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011446	Metagenome / Metatranscriptome	291	Y
F021857	Metagenome / Metatranscriptome	217	Y
F025588	Metagenome / Metatranscriptome	201	N
F035477	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211566_10104354	F011446	AGGAG	MEAMILDWASTQSWWGIVTTVIVIANGITMTLKDKYAENIPIIGKIWPILNWLSLNIANNKNDEK
Ga0211566_10104355	F025588	GAGG	MKTYSKFKKELNEDGMMNGDEGQETPATQIFYSPNDPEIVRTADVTMTVPKYRLSEDEKGCNHSCSHWRDQTWCNEYKFKCDPDYTCGSWKDSGI
Ga0211566_10104357	F035477	GGAG	MQNFKYFTEAKMARQHFQLIADVIAGLEISTTIKKSIAEKFADAFEDTNPMFKRDLFIKATKKKAE
Ga0211566_10104358	F021857	GGAGG	MIIIEKKVVKIKVKSRFCAVCDSKVRWQCKCPNNKVMARQVKKSFHEGKRYRGKRALEYCYDMEKKDAEL