Scaffold Ga0211484_1001393

Overview

Basic Information

• Taxon OID: 3300020269
• Scaffold ID: Ga0211484_1001393
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6641
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024330	Metagenome	206	Y
F034139	Metagenome	175	Y
F038198	Metagenome	166	Y
F067840	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_100139314	F067840	GAGG	MPKKYGKRYQQTKKTIYALYDILSLVVIILSFDKLLTSKTRSVEPRQVARLIEKLPKVKKILYDSAPWWAFDDMDISSK
Ga0211484_100139318	F034139	GGAG	MKLEEIYEQLNSFVEKEDKLISRWPCDSNYNVPTWDKIYDALDILDSIINYEPSDAELEAYNNDYQDPPHVVNQRMLEMKSESHGRRFV
Ga0211484_100139321	F038198	N/A	MTFEEVTLKNVRVTINFDIDLDTFKRYLETKEKDFDDVMAIYDMICTQSNRLNEQGEPENIRAFFDIDPETLNLIEDEVRKSIKFKTSFHPHLKRIK
Ga0211484_10013939	F024330	N/A	MSQNDKLPAGTENYPVNNYIPKSNPNSRPKKFTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDKLKAYQDACDVCGWSPRIKEARTLYIIDDTYISPTAIKRMRNLP