Scaffold Ga0211519_1026360

Overview

Basic Information

• Taxon OID: 3300020266
• Scaffold ID: Ga0211519_1026360
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211519_10263601	F017147	N/A	MNWNPNTYFENTEMTDELYNYWFSREVMYLFILKNKNYIPEVINIDYKKRKITFRWYDKSLHWLLKTRQIDSIPNWQDKIKAIKDDLEKDNTYKINMYPHTFFFDDEDNAHIMDLYGCTDVNTKYLDVKYLKPLIRNDRFDKFIVNDQLDTHELY
Ga0211519_10263602	F074760	N/A	YLSLLTTHIIIYDKYNIMLQKLETKTDSKILFDLVKHLPEGKNVLNRPTGNFFYDAWEVLPEYKGTAIEDLLKQLPDHGEARVIVMKPGESYSAHADIDDRYHITLDAEQSFLHDIENEMMYATKPDNTVYLMNAGLLHSASNYGYKNRYQLVIRKRLQHNNMMNDPRQVMMTSKDPAYNLRYLFDSSFSILLNKMAKEKQIDSFARINDTTIKFLCEGSKINDLLKMQQICGFEIDIVY