Scaffold Ga0211537_1004811

Overview

Basic Information

• Taxon OID: 3300020262
• Scaffold ID: Ga0211537_1004811
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3824
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F068939	Metagenome / Metatranscriptome	124	N
F080487	Metagenome	115	N
F085555	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211537_10048111	F085555	AGGAGG	MERYTDKDVIKRFEKAVKDRMTARVFNAMPRTYRDVFLLSEVREDMARYIVKLLNCDENVNNRIQYLADDIDKQR
Ga0211537_100481112	F019555	AGTAGG	MYHQPFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWIQLVKIFREGKPSIRVITVASSFGLRELLVHKQLYGEEVQNEQKRKKKLEQFRNKQKNMQTTNIAPSME
Ga0211537_10048116	F080487	AGGAG	MDFKKMLLETTDQQNHARWSGAIYALRDLMSYMRGLLKNAGCTHKSFSNDMVQYVGEELKRYKGLSETTDMGKKMKEIKDVQ
Ga0211537_10048119	F068939	GGAGG	MKQYEKYADAALSIVTYIPRLCIGVYNAIERHMPATLECNYEIKKKEYEIVRKKKEEKDGTEANS