Scaffold Ga0211588_1000034

Overview

Basic Information

• Taxon OID: 3300020260
• Scaffold ID: Ga0211588_1000034
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26845
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5123
  • Long. (^o): 37.8586
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016003	Metagenome / Metatranscriptome	250	Y
F105925	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211588_10000344	F016003	N/A	MKSIYISMIMKSIWKMCENGELDELKKRRNEINQLIEDIPNDGDDLREDEDDISFAAAYCKDHDTGLETFKYLYEECGYPRHCVHYAMVGAAASRNAKLINYIYNDIDEHEKAEFIGDLEEELAMTDHPNPSVFIEYALFELNKV
Ga0211588_10000345	F105925	N/A	MDNTKLQNILTLVDKNNTAFPENDYLDICRSLMDVYNEEIMPENHIAIPLEHPKNNQPRVPGEEDFYAAMSFLRKTGKYDCLYLAKKLKHEQREVSRYPLKRITNRVERDTRKKLCYDHDIPYDENSIPTIQKINLLLGSSYDLRDECKKYMKACNDTVEEYKDHLRMVENSFKLKIEQFKEFHETLGKCLNSINYT