Scaffold Ga0211529_1000132

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211529_1000132

Scaffold Ga0211529_1000132

Overview

Basic Information
Taxon OID	3300020258 Open in IMG/M
Scaffold ID	Ga0211529_1000132 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13619
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0108	Long. (^o)	64.532	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051478	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_100013213	F051478	GGAG	MHKNVKVLEGPWERENFPNGEETTDVISRKTITLFKEDGYLCEKTTVREYRDGDYFDTSSSRRICKVNDD

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