Scaffold Ga0211586_1016386

Overview

Basic Information

• Taxon OID: 3300020255
• Scaffold ID: Ga0211586_1016386
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1418
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036278	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211586_10163861	F036278	AGGAGG	MVIMTRDYQPEGVKYHFPDDDPYQESNEIYYNMVDFLDDAEVHQIWEIVGKAMDRNNIVTTDNESLSVRVYDELNED