Scaffold Ga0211696_1000061

Overview

Basic Information

• Taxon OID: 3300020252
• Scaffold ID: Ga0211696_1000061
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX555968-ERR599022)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14620
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (47.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080481	Metagenome / Metatranscriptome	115	Y
F105080	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211696_100006116	F080481	N/A	MYSIELIEEFIRNQIAKPTADPTILRSWYMYANASGVYHLTKGHAPGFCRLAKLAGKNINEEFGFDVIKMHFYGIWKNNEINNPESMVWEKDHNFTQD
Ga0211696_100006117	F105080	AGGA	MSDERPTLAEGFAKAKQYEGKKVVNVLSNITRRNKGSVGSEFEKKIGIPKSSERCDYRNGGDCKTLKFLKKLPAECCDIIMLQEILYEAMNNVPFYESAVYEKIQQVHFAPINKDGDIDEWTFGENFAISKDTHPELYNQMEKDYNHITERIRTLVNSGQYISARAVNQGKKVKILEIRPKGQGGGASRNTWNGVVITKPDAQSAYSYYFKQSGVKYIYNNRLTNI