Scaffold Ga0211700_1003889

Overview

Basic Information

• Taxon OID: 3300020251
• Scaffold ID: Ga0211700_1003889
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1917
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054784	Metagenome	139	Y
F088736	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211700_10038893	F054784	AGGAG	MKLENLGKNQTRVIMQIPDEELNFTWDKDIYFSYGVPVLIVNYRNAIVHEIAEKFSTTTSKHINAFKRMCNRFDDRGGPVEFQEGKREWAHVLAPESRMRTVAGEC
Ga0211700_10038895	F088736	AGGA	MDKKYINIPNTIENKIKVRQAVAEFMVEKVLPKDAIEQMAMDYLEETFKDAKHTIGDLARMVKETEIPPLHATAPEQPNQMLCFGTLTGYQGNGPEYYFFTKEQDYEYMACEVKEITSEEEVR