Scaffold Ga0211700_1003521

Overview

Basic Information

• Taxon OID: 3300020251
• Scaffold ID: Ga0211700_1003521
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2035
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F103425	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211700_10035214	F067840	GAGG	MVKKFGKRYRQTKKAIYTAYDILSLIVILLSFDKLLTSKSRSVEPRQVARLIEKLPRIKKILYDSAPWWAFDDMDVKSK
Ga0211700_10035216	F073669	N/A	MIEPNMKLLEAMRDEANLCYERGDEADGNALVESIFAQIFPGLVEAAKNDPKIIYQLIIQANSGDVRLADHSKSILLYLKNNGVKF
Ga0211700_10035217	F103425	N/A	DKTYKTYNVEAKGTIKLWMDVEASSQEEAEALADQVKERIYGEPGPWRPLYDGYTLEITSVRPEPDRSCMRPFIRDFDD