Scaffold Ga0211627_1005723

Overview

Basic Information

• Taxon OID: 3300020250
• Scaffold ID: Ga0211627_1005723
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555986-ERR599129)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2349
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0263
  • Long. (^o): 4.6977
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F087060	Metagenome	110	N
F092069	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211627_10057232	F087060	N/A	MYTLLLKSMTKSQTKSNDTSAKQVLRNIIGSTKRTVVTGDAPKTKKFDPVADQDDRLMKMVDLSLVIKDKRNEYDDLRKSFENDLKAALEDSEENPKIRHSENHRVHVYLSKRRVYKYSEKLTAKRSKLEAQLADLKDEEAKEVRHGKATLTKQTLTVSFKS
Ga0211627_10057233	F092069	N/A	MTTVIFEYNGKSKEIPINEIKSVNDVADAYAKLGLKSKKSIKRRLYYTLPNGKYHSFLSNKNHKYAVASTSKDTVLGFCYTDDYAKAKTTAANWTNKFNNAEEGFRKFVVVDLQEVK
Ga0211627_10057236	F018189	AGGAG	MELSKEQMEKVIYELECNYNSKIFDDENLIEIINLFKKYLNSGEPKXISYKGKN