Scaffold Ga0211635_1021909

Overview

Basic Information

• Taxon OID: 3300020249
• Scaffold ID: Ga0211635_1021909
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1104
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0136
  • Long. (^o): 4.6932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F011578	Metagenome	289	N
F023367	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211635_10219092	F011578	GGAGG	MITAFITGVVVAIPTSLITMKLLNSSLFISNTELREANAKISLIINNLDDFREERMKDKMERLGITDKLDERLSTHIK
Ga0211635_10219093	F009691	AGGAG	MKSELNSKDYVTFARRFVKETVATMDIEELKGIVTDRIHEEIQEGENTYGQEGAFEEMIAWSEDVFLSVAKDFELELEGA
Ga0211635_10219094	F023367	GGAGG	MTKTKFIFEEKFISYANVEIYAENEEDARLQFQNGNYQYYDVSDYTEGHELISVKEEEPVNYYQGA