NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211635_1010415

Scaffold Ga0211635_1010415


Overview

Basic Information
Taxon OID3300020249 Open in IMG/M
Scaffold IDGa0211635_1010415 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1708
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0136Long. (o)4.6932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019665Metagenome / Metatranscriptome228Y
F019666Metagenome / Metatranscriptome228Y
F021511Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0211635_10104152F019666GGAGMPHIYIPEIFVTQDEYDMIQDNQVPIDAFVANKIRDDQMFVYVQETNCTYKRAQNYSWCPELESRVLSENPDKRSTICDI
Ga0211635_10104153F019665GGAGGMFDTYIDDKDMIPTLLDYGWIITHNTWTDCPYPTYKAIKKAYSHNGNAMIFGEMM
Ga0211635_10104154F021511GGAGMQDITNDAVKAVMSAYTPVEVKRLLHSHDEAMFVHHQDPKDIVEFYGTYNEDIHHWLLDDSHAFEYYANAMAAYNYAQAKCKCEHERFALQQEYLKDVVYIFIATICYDLAASHDMLDMSMSEVEDYQLAKELQHAKTKLTVIDGGKK
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