NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211584_1034159

Scaffold Ga0211584_1034159


Overview

Basic Information
Taxon OID3300020248 Open in IMG/M
Scaffold IDGa0211584_1034159 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034139Metagenome175Y
F073669Metagenome120N
F103425Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211584_10341591F073669GGAMIEPNMQLLEAMRTEANLCYKRGDDEDGDALVNSIFDHLFPGLVAETKRNPTFIYELIALSNTEKDEMKANHYRSILKYLKDNGVKF
Ga0211584_10341592F103425AGGAGMTDKTYKTYNVEAKGTIKLWMDVEASSQEEAEALAEKCALLKFHERILDTGPWRPLHDGYTLEITSVQPEPDRSCMRPFIPGYDD
Ga0211584_10341593F034139N/ASIHIILKEYIAEQEKLQSQWPCDAEYNVPTWDNIYDALESIESIINYEPSDAELEAYNNSYSDPPHVVNQKMLEMKSESHGRRFV
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