NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1004407

Scaffold Ga0211654_1004407


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1004407 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2405
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10044072F032309N/AMRNETKEFFDYTQSLPFKDITHFWDIPYKEMLDEIKIVDESYWRRPFDADNDQIDRMKLDDKESVNHYPGLTGDLIEAHGWKSLCFLNETGNSKDQINRFPAVFNTAGDYKATLKYFLDNRKWTNVAEFSPTLVKFFKEVINKYMHVGQIFVTRLEGGGVITEHNDVPEDTKHLLGGEQVHMFDMLNTFNLCLNHVESCYGVFDNKIIPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKDFRRLVMENK
Ga0211654_10044073F033761GGAGMTITNNHTYFVLDTVFKNRHKELFDFFEGQGADIEINEDFAGLKTILTSKDKDDYPYDFDPAFESNLDNAKGFVLLLKIDDEVVATYAAKKLAIPTFVDAMKEKFSGTYEDVSDMSGQSAYSSCQWVSKDHRGKKLGRILDHLKKHICFDLMKCNNNYAIHKEALANYHTEHLGYNTTQKLALIPNGDVGGAGEVIDKIYNLTYTTSTEWTNKQSDIKALYS
Ga0211654_10044074F019327GGAVTLKHYTLRPTELDSKHISQIHKIIKQVIDKKTDEYWKNYEDYSVYGQTAITIGLIDEDVKTFSSIYNREFYGDNVYRLFNRFLVSDDIRETGGSKTYGGEHRFFEMVHQQIEYVKSLNPSFYFMSRQRKNTKWLRWYFDRFNKQYDTDLVVSDKQYMVCNGSEYDCSQTLIYPKDKIVPFKSYK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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