NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1000841

Scaffold Ga0211654_1000841


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1000841 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5743
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013421Metagenome271N
F017147Metagenome / Metatranscriptome242N

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10008411F013421N/AMKYYYNNVPGKGLCRNNLIYTSLINEDKTEFCMWFNNDTDYHKGQNEVVDPALMDMKFRREKDFLLLLDVDHKEIIPNITRIDSEEKKIYFEIQGDDFWEQSHGKKFDDVVPRWQEEMLYMLETHKKLGIYKYSLHPSSYWVIDGELRNVNYFFAYREDETPITVQEHLSHISKERQKELMPKMKKMRIKATKSYSFHKLQILCLESFRNVYPDSFID
Ga0211654_10008419F017147N/AMPDWNNFYKFKGGLAVTNMLYEPLVSNDKKIFCMNWNPNAYFENTEMTDELYNYWFSREVMYLFILKNKKYIPEVIDIDYKKRKITFRWYDKSLHWLLETKQIDSIPNWQDKIKSIKDDLEKDNTYKINMYPHTFYFDDEDNAHIMDLYGCTDINSKYLDVKKIKPLIRNDRFDKFIVNDQLDTHELYNETIKTNYGEWPGDFLNA
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