Basic Information | |
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Taxon OID | 3300020247 Open in IMG/M |
Scaffold ID | Ga0211654_1000027 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25263 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (79.49%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_102 | |||||||
Coordinates | Lat. (o) | -5.2476 | Long. (o) | -85.3343 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007414 | Metagenome / Metatranscriptome | 351 | Y |
F047691 | Metagenome / Metatranscriptome | 149 | Y |
F047972 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211654_100002714 | F007414 | AGGAG | MATMLFNGLVSLLGNPSPTRAFEKEMLTYAKTEYGSDWQYAYHYMMTHEGRGPRMGVKN |
Ga0211654_100002726 | F047972 | GAGG | MRFFEFTGTDETIDKYVILLKNIIGRAEMKKSPAKMNWAGLSNLALKNKIQLAADYETFKAIYDSSPAIQSLVKNFNADGIELDVPGAPDADPQSPQSDQSSQDAVDQTAASAAPQQLSQET |
Ga0211654_100002736 | F047691 | AGTAG | MKCEQGDLAKVIHSVRPENIGKIVLVKEYIGKYKQNDTFDFRGVSCMCPVTDHYWWIEATGLKNQFGDSPKAYIADSWLEPIRPETGKKSATHVVKDKEVERQAA |
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