NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211654_1000027

Scaffold Ga0211654_1000027


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1000027 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25263
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007414Metagenome / Metatranscriptome351Y
F047691Metagenome / Metatranscriptome149Y
F047972Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_100002714F007414AGGAGMATMLFNGLVSLLGNPSPTRAFEKEMLTYAKTEYGSDWQYAYHYMMTHEGRGPRMGVKN
Ga0211654_100002726F047972GAGGMRFFEFTGTDETIDKYVILLKNIIGRAEMKKSPAKMNWAGLSNLALKNKIQLAADYETFKAIYDSSPAIQSLVKNFNADGIELDVPGAPDADPQSPQSDQSSQDAVDQTAASAAPQQLSQET
Ga0211654_100002736F047691AGTAGMKCEQGDLAKVIHSVRPENIGKIVLVKEYIGKYKQNDTFDFRGVSCMCPVTDHYWWIEATGLKNQFGDSPKAYIADSWLEPIRPETGKKSATHVVKDKEVERQAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.