Scaffold Ga0211654

Basic Information
Taxon OID	3300020247 Open in IMG/M
Scaffold ID	Ga0211654_1000002 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020247 Open in IMG/M

Scaffold ID

Ga0211654_1000002 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	119744
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	142 (79.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

119744

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

142 (79.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2476	Long. (^o)	-85.3343	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_102

Coordinates

Lat. (^o)

-5.2476

Long. (^o)

-85.3343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211654_100000276	F009243	N/A	MSNNFEYYYNTVPGKGQCRNNLIYTSLISKDKKTFCQWYYNDEQYHGGHNQVVDPDLMEEKWLREINFIQEMEMHYPQHVPEIQDIDFVNRKLFLKIDGPDMWELAGCEGKDYSVVDNWEQQMLDIIEAHKNLGIYKYSMHPSSYFVVDGTLKSINYFFCYKDNDPAISLRSVMSHISEDRQADLFPKMTAAGIDVNTPTEHVKIQQLAFDSFKTNFPDSTMEKAKQIYAA
Ga0211654_100000282	F048972	AGG	MKHLGVCNTIDWDSVIEQCASVEPEFVGPSHKRGDTIPGLDPILDMWEEAGIKTVHEGGTAGWDMFIPGKQFDQSIVDAWNEFYGLDCKNVWISRIHPGRFAPIHWDVHDNEENIPDCPRYHCHIGSPQWGHIFIAGNDTFYNIPQGATYEWEDRKIWHAGTNCGTVPKYIWNAW
Ga0211654_100000283	F026261	AGGA	MAKLVGTTKDVIDWDPIVDLCAKCTTGDYNSVKTVVDRSEGNWRDNPELLGSYHNVIDTWDKAGYNLDEIQWWDYYPGEHFDIEIQNKFAKIIDAEPLRVFVSDVAPCNNVPYHWDVEDKEEEWLKLGELKRWVCFMDKPRWGNVLVLEEQAFHNVAQGEIWEWDSYRSYHAGTCMGVHHQYLFHFLGRPNK
Ga0211654_100000284	F019396	GGAG	LNAKWQPYLKLDPEGWPCMAQQTYEPLISEDGTTFCKNYNVDSEYQKMENKPRPLYTKEVVDWFFQNELTYLELFKDKKYAPEVKDIDYKNQKIYIKWYGKSCNQIINDPEIKEWPEYMWRRQIRDIIVDQYDEGIYKLTMYPHCHYITDTKQMKAIDWYGCVPIDDPFIEQKYMQGIIHDTAQFRLDETGEPIDDKVNLEIMFKRSLGEHVLWGDENMSYIYKELFGDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211654_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences