Scaffold Ga0211707_1005520

Overview

Basic Information

• Taxon OID: 3300020246
• Scaffold ID: Ga0211707_1005520
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1930
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F077401	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211707_10055202	F077401	N/A	MSGYTKILARDIGSAHRKAQKHYKYHMFNSNFNVSVMSGETDDRGYAKECEYSTGQWTRKAYSAYNYFHSLEPDMQERVYNHCENNNDDWRDKSKSELQVIVGELS
Ga0211707_10055203	F033839	N/A	MNNMSPITRAFLTVGIGVFIGILPVFMIINSLSTTAIKFCGRYGPDYTIVTVDTPFGSVKRCVAKD
Ga0211707_10055204	F043451	N/A	MITGKCILVETMSSIQPWLYPNNPSSVDRVAYTPTLSAHILEYQEEMIDAEGNVYWKTVDSTTFGGSTSVKEFLEQMKDYYESRSLERIKHSFDNPEYYE