Scaffold Ga0211492_1034839

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211492_1034839

Scaffold Ga0211492_1034839

Overview

Basic Information
Taxon OID	3300020238 Open in IMG/M
Scaffold ID	Ga0211492_1034839 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	959
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_066
Coordinates	Lat. (^o)	-34.8986	Long. (^o)	18.03	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016457	Metagenome	247	Y
F084838	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211492_10348392	F084838	AGAAG	MYCEDPHSYKYSMCVLQKRSRYQSRRNQIMKVIVLMIVMTMYGCGFKPSVSCNVNDINTAIKDCKEQPQFGISKEF
Ga0211492_10348393	F016457	GGAG	MNKRTLDILFYISIIVLCISLTSCASKNKKMETHPTNNKNALEALDKFWELLRPVRILTTGVNK

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