Scaffold Ga0194125_10383376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194125_10383376

Scaffold Ga0194125_10383376

Overview

Basic Information
Taxon OID	3300020222 Open in IMG/M
Scaffold ID	Ga0194125_10383376 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	895
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.9054	Long. (^o)	29.4853	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032934	Metagenome / Metatranscriptome	178	Y
F079773	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194125_103833761	F079773	GGA	MTEVAMNLNVHEIGVILSALQELNLREEHRIAREYGSVPALYNKFY
Ga0194125_103833764	F032934	N/A	IMNKPIVIKQFAKRWYLHWADTGQIIASFATQFEAYAARKSVIEFNNKGGI

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