NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194127_10177877

Scaffold Ga0194127_10177877


Overview

Basic Information
Taxon OID3300020221 Open in IMG/M
Scaffold IDGa0194127_10177877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1507
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F014844Metagenome / Metatranscriptome259Y
F032581Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0194127_101778771F032581N/ADEITRLTDKVKNDADWYSERITRYLMENRTDYPLFNSPPSAIDTIYPNGTNYNTGMALDARTLRRGAGLDRPWPYGYDPYCNNC
Ga0194127_101778772F000847N/AMSWIKIKQALLTLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRFRIVYPLVFADVQSATCDAGTLSLVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEEWTLSTSVSLTRFVESRDDRTAGWVATMTFEIPYGHSVCEIPT
Ga0194127_101778774F014844N/AMLIGYGFGYPSNMLQGGLAASAWAAFNARATADGAATAEDAVSGCLFNRFAAIFNF
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