Scaffold Ga0194132_10362394

Overview

Basic Information

• Taxon OID: 3300020214
• Scaffold ID: Ga0194132_10362394
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048168	Metagenome / Metatranscriptome	148	Y
F058806	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194132_103623941	F058806	N/A	MSWQIPTEIEKDFKSGKATYRTFQTGVGGQSILPVPANSYVVIFGYDFSPAGGGFKNLESQLGLPDGGPRAILNSTFIRWFETQQIAFYTGNDFYPFIHHVDLKTTVLPSRITNNVPVDGTFNNV
Ga0194132_103623942	F048168	N/A	LSGLAKAFEGIIFSSTTSAAPGTLVNALQLRVTLTINNDVVIDDVVAHELGASVAAGITTGFPAYIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI