Scaffold Ga0194132_10190329

Overview

Basic Information

• Taxon OID: 3300020214
• Scaffold ID: Ga0194132_10190329
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013274	Metagenome	272	Y
F031383	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194132_101903291	F013274	N/A	YSYNENAAPSFSDVNSITDVSLIKDEIKKKDSSNLKKEITVYFKSYIFYYLTFLWTVCLMITIVSITFNKYNPDKPGCIMRMSLLNVIPITLFMFLLGWIIYQNTVYYKKINSGHVAETYVTFDTAVNILLLIQAGIMYAYINQQMLCSSEMGQYSEAMSKYGPYIAGFIALLSGGCMVLNEIILRFFTTDG
Ga0194132_101903292	F031383	N/A	MEIVSRLPFDLQEYIFVKTMKLYKLRDGKYVRQIDKTKYMFLDYIMRPSINKNSSLHYYEDIQEDIFNSNDYRELFHYKFSIKNLYDDPRRKESNVDDDIVYVRIECKNNIYYYEISIFRLKMKNTNEDIFTRDKMHKDIYHKGSLADNYFWDFIEFYYEVQ