Scaffold Ga0211731_11753632

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11753632
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1850
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F011292	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_117536323	F002420	GAG	MTFRESTIKYIKDILRPKTIYEVIHTELQEAYLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDT
Ga0211731_117536324	F008303	GAG	MIDKLILSAVLGTVGFNGLFPEPPQPITPWQLQQKAKEKSIREMCDRKPKSKTAKDLCRRWRKHNA
Ga0211731_117536326	F011292	AGGAG	MTPKSFDIDTAKEIVGDAQMRTIEAKARQDADNGIMDKPARAEGSYWDGIRSDMEYIVYITAHHKRLERIQRMKEKSNA