Scaffold Ga0211731

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11697475 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020205 Open in IMG/M

Scaffold ID

Ga0211731_11697475 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9180
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9180

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F045753	Metagenome / Metatranscriptome	152	Y
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1169747511	F091602	N/A	MKSELTFCPNCESKELGERVDEILRNQQLQDWDTAYEYVDDEGEIKVCFDCQEWDDADDDAKGEGWD
Ga0211731_1169747516	F045753	N/A	MYCPKITYCFNDDDIRTLNERIKSIANNYNDDQTGWFEVDETQHLVFVDEQDNMYTISLRGRFWKQDDPEFDLDFVTLEKDGISFSFDINIFDDHI
Ga0211731_116974752	F021113	AGGA	MNRNILAAILLFIGTSILWLVLCWNIWGKKDAKDTYSIVQKQDSIINYNAGEYDRLLQEQIQLYKQLRTYEDAQLTAKTTYKRTRDSIIIRDTITIVDVIHLVNSCDSVIASDSLVIDNLKGQLNIEGEKINNLQEVVDAYEQKEEVLTEEINNLTSENKKLNKQKKRRNHALVFTSSVAILSTFVLSILL
Ga0211731_116974755	F019140	N/A	MKQTPLYESLKMTYEREREIVNSMATYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGNMMSKNATDEAE
Ga0211731_116974759	F012871	GGA	MLRSASTTTLTTTQRIDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELDKKCEHYGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQNKQLKESEMAVNDDSWRRMLAEDLQNYKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKAKARKNIYFEQQLVQSMVDRMSDRKRMLLKESISFEGMRELYKLYLKKQTLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211731_11697475

Overview

Ecosystem & Geography

Associated Families

Sequences