Basic Information | |
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Taxon OID | 3300020205 Open in IMG/M |
Scaffold ID | Ga0211731_11697475 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9180 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012871 | Metagenome / Metatranscriptome | 276 | N |
F019140 | Metagenome / Metatranscriptome | 231 | N |
F021113 | Metagenome / Metatranscriptome | 220 | Y |
F045753 | Metagenome / Metatranscriptome | 152 | Y |
F091602 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211731_1169747511 | F091602 | N/A | MKSELTFCPNCESKELGERVDEILRNQQLQDWDTAYEYVDDEGEIKVCFDCQEWDDADDDAKGEGWD |
Ga0211731_1169747516 | F045753 | N/A | MYCPKITYCFNDDDIRTLNERIKSIANNYNDDQTGWFEVDETQHLVFVDEQDNMYTISLRGRFWKQDDPEFDLDFVTLEKDGISFSFDINIFDDHI |
Ga0211731_116974752 | F021113 | AGGA | MNRNILAAILLFIGTSILWLVLCWNIWGKKDAKDTYSIVQKQDSIINYNAGEYDRLLQEQIQLYKQLRTYEDAQLTAKTTYKRTRDSIIIRDTITIVDVIHLVNSCDSVIASDSLVIDNLKGQLNIEGEKINNLQEVVDAYEQKEEVLTEEINNLTSENKKLNKQKKRRNHALVFTSSVAILSTFVLSILL |
Ga0211731_116974755 | F019140 | N/A | MKQTPLYESLKMTYEREREIVNSMATYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGNMMSKNATDEAE |
Ga0211731_116974759 | F012871 | GGA | MLRSASTTTLTTTQRIDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELDKKCEHYGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQNKQLKESEMAVNDDSWRRMLAEDLQNYKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKAKARKNIYFEQQLVQSMVDRMSDRKRMLLKESISFEGMRELYKLYLKKQTLA |
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