Scaffold Ga0211731_11667902

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11667902
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4089
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022396	Metagenome / Metatranscriptome	214	Y
F034152	Metagenome / Metatranscriptome	175	Y
F083740	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_116679021	F083740	N/A	MLTERTIFSLCEVLPNTTLQVRLADQIVDGEAVKASTFRRYCLAPGSDLTGQPEQV
Ga0211731_116679023	F034152	N/A	MRLGLGLGLGTQESLGGAGGADLPIIRRDLLQEDDFFVFLEDGTSKIVITFGTFDSLDLENGDFLLQEGTGKLIIQAN
Ga0211731_116679024	F022396	AGCAG	MNTGSNRQLAGEYGGKFIDASLGTVTGDFMEIKAVATTILGAVTCNITNFPSGVTVQAGDSISGVFTSVAVSSGQLIAYNRKYA