Scaffold Ga0211731_11540180

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11540180
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1177
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009745	Metagenome / Metatranscriptome	313	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_115401801	F009745	N/A	LGNFSCSVRITLFSNADDTTLADHRARCAALSGNMNDVASIQAAFAATGDATCYDVTPRSEDEGIDERSWATSFAYDVLTVLPPV
Ga0211731_115401802	F092032	AGCAGG	MCAAVNTGTVCLYGIGSGQQASLFVQSYTISSGFNNTGMVVDETGRTITARYDDRRSEITVEGVAKATNIPVLGTTLSFTVKTASAYPAGAASLSFSGVVTKVDDRGSSKGFVTVSLTAESFEEITY