Scaffold Ga0211731_11469516

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11469516
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24915
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y
F034181	Metagenome	175	Y
F037724	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_114695161	F037724	N/A	MNPKEALQQIRALFEDMPQVVEPVAPVAPEVPEVTKVEMAEYSLVDGTKVMISALEIGGMVEMADGTPAPMGEHQLMDGTSIQVDELGAIVEISSPKEDIIVEEPVAPAAPVPPAQDTNAMIAELKNDYEKKKMELEAKIAELESKVKNGFAQVAELVEALSNTPTAEPTQKAANAFQSYVSTNDSKYERLEKYRKAILN
Ga0211731_1146951622	F034181	AGGAG	MNAIIYLNYQDRNTDTLFANIKNAGKHIDFISIVNEIGIAYAINKGLRHFNYDYVEYVTIMGNDILEPNNWLQTRNEYMEDNTIGICSIPLDGFNGDSLDLIGNFTIKAEVINKVGAFNEELDPYGAIDLDYCTRCRAAGLHTKFIPNTKATHIEQNGIDAYGYNKMDLVKKTWDLHNQNVSDYSNRTKSYYIPL
Ga0211731_1146951628	F032657	N/A	MEIQKHLSQALQVSNEWTTSNNGLIVDNEIAKAFKGQKLNLVSPITLKENLAYIFTLLGMTRYPEKEEFMVIEDFIRSSYPKYTIEEFVIAFKMAVQGKLDCSVEHYEKFSPKFIGQVIAAYTKKANEVRKMTKHIVNEIEPPKLTDEEIVLFTQTEWLNSPKIDYNRIFNADRVFNILIKNGRLKIEPKEILEIIAIVKEDNLQKSSKLFGKEYTEFKRNTLDADFIDKQCKKLALAKYFEGFSG