Scaffold Ga0211731_11419140

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11419140
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15023
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011389	Metagenome / Metatranscriptome	291	Y
F018918	Metagenome	232	N
F019829	Metagenome	227	Y
F061848	Metagenome	131	N
F082693	Metagenome	113	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1141914015	F061848	GAGG	MNFLIAKIFTAVTISLSGLAVAYDAYNAPSALPVTPPVTVSLAPIVPLTTTTVKPLTDCQYALQLAQQAGWPLTEMGTVAIILYRESACKVNAYNGKDTAGGSYGLYQINGYWCRPNKYWPTGWLQAKGILQTCKDLFDPVVNTNSALAIWHNSGYGPWALPNP
Ga0211731_1141914016	F019829	N/A	MTEQQIPDPGLTESTRQMYTEKYRETFNNFVDEVFRPNHVPAPKPVDHSILLDELAILREKYLNGTPSDEHKFAGAVITAAMAVIIGI
Ga0211731_1141914017	F082693	AGG	MAQLDERVTIRLNGADRTELNYLYQELQTQTKQLGARDTFTHGYTPKASFTGLVAEYAFAKWFGIEFAIKPYDPTNDDVLGYQIKATERYNGCLIKQPHNPSGIYVLGIVLNDYTEISFRGWKDSSEIQRACYWRADVPKPGYFVPQEALWSLSDLPETNELQTHRTTGLW
Ga0211731_114191403	F018918	AGG	MAVYSVSQKYLTDNYAVLVLLTNADPLEVGQSVTIAGVDATFNGTYTVVALPQYYFTGVDDQGFFHYDIEAPIANQVLFAKTADNVNVVAASGTLTTTPTCTWVTTDAQIEDWLGIGTATAADQAFITQCRLAGNEFAYRRRREAGYRNESLTTVPNASVLLGTVAYAAFLYRQRGSVTDFASFDGLAAGGSMGLSPMIKQLLGVDRPAVA
Ga0211731_114191404	F011389	AGG	MPVAYTDLFNTALDNLTATLQTVTGLQVVNDPRNLVPPCAFIDAPSFVAWNYNIVKITFPVRLITLGPGNLDAQRSLMNMAAKVLAENVAVTDGRPTIAIIGGSEMAAYDLTIEMQAQTS
Ga0211731_114191405	F084137	AGG	MYIIKSPRVGIVGTEFVPKPGVQVAGLILGGFIIEVVDEVTDEVTDKVSTPAPKKGAKNKKATKED