NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11062365

Scaffold Ga0211731_11062365


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11062365 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5009
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010014Metagenome309Y
F018866Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_110623652F018866AGGAMSRHKTYRNTETTSEPIDAFKNLLEDSAREAYSRPWHRLERGLRLNRFRIFIEDVAPQYEMTQEEREGFFLFIQKALDKKLLNTLKVVNYDQEKQRITAIRGLEIKRNGEGVLKWGFSVKVTHGDKAATRKKKKDEISSVSTQCDTKIESA
Ga0211731_110623654F010014AGTAGMAQPVYPDKHTIGADNAFPVPEFMARSRREIDTIDAINARQFEHWQTNGKSGVYNRPDMNNQAAFYDMMPNSSRMNDKSYRSQPRYDANGEKGVQNPYFDKYDTTSDARNMTRELKASVYEDKNTGYLKESSLMLQRNFDNRWLNPEVVQQQAEAAEMLRPKMDDIRLFYKNIPSSDD
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