Scaffold Ga0211731_10897294

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10897294
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34080
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (89.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025745	Metagenome / Metatranscriptome	200	N
F048311	Metagenome / Metatranscriptome	148	Y
F088888	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1089729412	F025745	N/A	MPANAPTLTVAFGISGSFTNVSADLLLEVDIRRGRQYQNDFLESGTAAVVLNNQSGAFDPSNTSSPWYGVLIAGMQVRITGNSTVIFTGFLEDNAVNQGIYPTVSLTFVDGLAQIAKAIAPALATSSFQEAANVRAARALDLADWSATARSLTGTTVMQKTKQNMSCLEMLEQCANCVGGRFYVSRTGVATLVNIADKFTRPTRLLFSDQGDANSVGYDGIITNPGTDYVYNEAIVFRGPKKAQKTARYTSSVTTYGLKSKKLDAPIFSETSAANLALYAARKDADAVVLAEQIDFTAIGIGALATDMLETELNDLVQVKRETYDGRFITIDCVVEGLAHSITADNWRVSYFTSVVDPYTITL
Ga0211731_1089729414	F048311	AGGGGG	MDNTTELDINVVIAALREQIGLLALDKAMLTARIGDLEKALKEKNDRE
Ga0211731_1089729428	F088888	GGAG	MKLTKRGKRVRAVAILAAAVAIWYVSGHVWWVGDHYCWGTMTECFLGKE