Scaffold Ga0211731_10774403

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10774403
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 990
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → Mariprofundales → Mariprofundaceae → Mariprofundus → Mariprofundus ferrinatatus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014954	Metagenome	258	Y
F033353	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_107744031	F014954	N/A	MKTITLNRARYTVRDDRHSFLSDILKLTGKHKPVKSKGPERRLYPTDGAVSTADYVREYYALNSNRKLFKSGVAPYGDANLAGFYDSLSDRLTVPMGEDSMEVCDAI
Ga0211731_107744033	F033353	N/A	MIFHNEEFMISSEVTQTPDGRWRVMLRDDDSGRTLDTVRFYSSEADALAYAEKLCS