NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10606367

Scaffold Ga0211731_10606367


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10606367 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053831Metagenome / Metatranscriptome140N
F063331Metagenome / Metatranscriptome129Y
F088345Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_106063671F063331AGGAGMTDIDNFALLNELKELLRQVDLGDTEQVRSELQNIIDRVQADCDERHRIYLERVERYMGHVDS
Ga0211731_106063672F053831GAGGMSNWQKLNYSGDKFKPFHIKLDYCHEEMTLRDIYKYDDDQEWIDKTAQEITDGYKYFVILRARAYLAGVEVGSHSLGGLLFDNTDEMESMMRLDYEGIIAEAVEKAKHNLKQMADAMKERVTA
Ga0211731_106063673F088345N/ALERREIMYRKYYRVKKMDELEKFFLPPDIQSWIMRYDAGSEQALVKQVPLTEDNITMIDRLAGMMTITRRYRGPRHNSRNFTRDCPKKDAERVSVYLRERVA
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