Scaffold Ga0211731_10346658

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10346658
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36894
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (74.07%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002997	Metagenome / Metatranscriptome	514	Y
F006110	Metagenome	381	Y
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F022651	Metagenome / Metatranscriptome	213	Y
F023109	Metagenome / Metatranscriptome	211	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1034665830	F002997	N/A	MGIARFENIRVNQLTFGASSFGEQSTTITKWFDTRARVASVSNSVRISEKYRVYADIVEFTLNYTPNTRTIVNSQNLYSIAWKSVNWRIDSVRESNDRMTVKLLCVRNDPVVAV
Ga0211731_1034665834	F022651	N/A	MTTTIKDSNDLLGFLVSQAESRKDWFGFSQQRMTAVTLAHQIAQHHADKMTPDEVVDYALQLNHLIFHKIIKAG
Ga0211731_1034665836	F054875	AGG	MTKFSSAFGDKYQANKKNLLIRSFELGGHTFKVRIPLVAESEEIYKKVSEPDDETVEKIYVEITASLRKFETTQTEDFKFTDNDILVEGRSMREASKNKAITEARITEFFKLLVPELEGASLEDLTYADIQDEFPISVQMQIVEKIGEVISPTYKEARGN
Ga0211731_1034665837	F043944	N/A	MIFNGHTLDTIQDIDDVTMANIQTMYADGLVGNYGVLTQIATLTNGVFNYMRPANSPPYKLANILANAYDYIYPPLPEGSKQAAVNDSLLMFMTQAQGFDKKLFEVKHG
Ga0211731_1034665839	F008619	GAGG	MSFQTIFEIQQSMTVNNRRVVGQQVARSGFITVAQYLTAVPWVFTIQPHAYLYYPQVRAIIQAIDNKDRQLSETIVMTSSNLSWFTSMQGTATAATLNGAPAANTQTLALTSNGTFKAGDFIMISGYTYKITADSAGSSVNIHRPLIGTPASGTTVFIGNQCTFTVVAEACPTYTLNPMTNGAFVQWDAPFVFREYIT
Ga0211731_103466584	F006110	GAG	MPRPKPPEKLIGRQIRMSDRQWIIFNQLGGAEWFRDFLDKKAPMPKQYYNAIIQQKETNHDRTRHQPV
Ga0211731_1034665840	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGVAGTVYTFCNAAAPITVGGNTFSNLGALLNVGDVQRDIKATSDDMTIALTGILPANIAVILSSDIKGSLVEVWRGFFDSNNQIITSPTTQFFKRYQGIINNVAITEDFNSEMRTRVATCSISCSSMRRILENRLSGVRTNKSNWQFIYGVNETSMNRVSEISNTYFDFGSPPKTNTQSSETTVTDNSAGDASP
Ga0211731_1034665841	F023109	AGCAGG	MIRPASKYDIPRLLEIVEAYSYENPIKKLGDSCNHFPRYVEQLLFEIISGRGFIYIDSNLRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTIGGRLWKAFDERAQAMLKAGDVDFVCTSISANGPLIDYTRHGYKPVGATFVRE
Ga0211731_1034665844	F073561	GAG	MFQLCIGNATMALFSKNVITQVSGFDNPLITGELVYNQRWYWNLTILDVAGAPVNLTTATITADIARRQISNLVDTRNGLSFDVANYATVPTPINLTITNKVNAAGSFTLVIDDTAWGLINSDPQLKIDEQNPVCFTGKIKLAFAAASPTPAEDDIIFLMFLVRSDGVTVL
Ga0211731_1034665849	F000332	GAG	MRWLLLLLLLALVGAVAKNGCHVREFYGIGYTIHNPSERHQQMIAWLKNNAPHCGSADYVILWNNLAGWAGTADSAETRALIIYGYQEALKREKK