Scaffold Ga0211731_10105843

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10105843
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7673
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F003213	Metagenome	500	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F026267	Metagenome	198	N
F032279	Metagenome	180	Y
F037730	Metagenome	167	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1010584313	F001279	GAGG	MSVSTTITVVGVKDTINGLRKIDPQLQKDFKAQATLIAQPAVQAGRDVYTALPLSGMKYKWTQRDRKLFPFTVSKAVNGVKMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANRLSNSLGFVGPGRTRLIGPAVYKARRGVEKELKSAVMDAMRTVQREL
Ga0211731_1010584314	F026267	AGG	MKVKLKLDLADGKPEREFTTNLAVICGWEYLENRRVSDGKGIGYSDLVCWAFLLAKGAGDKVPKTWREWLEQNPDMQVTAVDNTDPNPTGLELTEGN
Ga0211731_101058433	F037730	GGAG	MIDFDEARHTNDYLISELVIARKENEVLTEHIETLMKHIETLAQDLKDSSKLLDAFVAYV
Ga0211731_101058434	F055728	GAG	MRRSYDPHYGSREQLRDSAEHGMKVARERDALKLENKELLDQITELKALVKYITEGE
Ga0211731_101058435	F013413	GAG	MTENEYDETFDLQMEREHQETLRRMQEFRLIGEQISKMPDTPPKVLEIELRYLMGIISELEARIKDLESEVRRFELLVTRGN
Ga0211731_101058436	F032279	GAGG	MHLIIKLTIAFALSAIGLGAYQVPQPRPDMSSTTPTEKPYEALGGFGQAMADIYRYVPSTTTTTLPAPVYKHGDCSWLPAVALQAGWQPEQLIQLTKYSLRESGCCPNRIGGDTVDKNCKVTGVAEWSHRSDSGLLQINGVHWKPDHAQYDGLICKQMKICTQEPLLDPLTNLQAARLIYIRVGWSAWDKCHSTKSCK
Ga0211731_101058437	F024785	N/A	VKPYTVNAAPVVAKPLQGMDAWLTRAVFHSNKSLWNNGSWILRDVRGKPGVVSNHSKGLAVDLSYRWQSQKNRGRQDGRKVSLAFINKCLEHADTLGIELVIDYAMKRSWRCDRATWKAFTCEEGDWWHVEVNSAIAHSPELAQQAWNRVFGLIPQVTIKPV
Ga0211731_101058438	F003213	N/A	MTSKNINKAKRQIGDQTTKGGLLGIMIYALSRNNVDPVLIGLLVPVAASFLAWVSTKIGDPDLACMFIPDDK