Scaffold Ga0194116_10038312

Overview

Basic Information

• Taxon OID: 3300020204
• Scaffold ID: Ga0194116_10038312
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3584
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4662
  • Long. (^o): 29.9408
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020856	Metagenome	221	Y
F041608	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194116_100383124	F020856	AGGAG	MTEKNPKKKYFKPKKPVDKMTEEELDEFAQFIFDNLMGDIEDDRKNDDTSS
Ga0194116_100383125	F041608	N/A	VVMYRFAEYTPFELLTALLAARAVKRDSHFSGFAPRANLSHVNFLSDGTLEVVMVKRKSG