Scaffold Ga0179592_10073942

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10073942
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005924	Metagenome / Metatranscriptome	386	Y
F055459	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_100739422	F005924	N/A	MTDKIIYDVYRGTADRTLRLATMPGAGLPAHVKRKEWVLMPKGKSPVHSDAVRDISIRGYCFFQVVESQ
Ga0179592_100739423	F055459	GAG	MGIFGRKVDDEFDALIHAIGRLLHGKGHDLQRAVLTDLVSRWIMGHHPSQRRQALAMHVQAVRDLIELNEDALATRNRGEPEDW