Scaffold Ga0179592_10000671

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10000671
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13755
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002591	Metagenome / Metatranscriptome	545	Y
F005190	Metagenome	409	Y
F030042	Metagenome / Metatranscriptome	186	Y
F032602	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_100006711	F030042	GAGG	MSDYSQRVSGSFNERKRLIRLRRKKENLRFWEEFRIIPRWLMALVAILYVLALVIATTVNLAQAHNPNGNEMFPWELRDNPALASLALAGIVTLVSLCMATIIFLLAYVNRDASRRGMSAALWTILVIILLPAWGF
Ga0179592_1000067110	F001811	AGG	MRGFSSSVLSCLERERLEEELSEARIRGRNLSRLRRLTSPERATLDQREQAAQTRLRDHDAEHGCQR
Ga0179592_100006712	F005190	GGAGG	MNPESHARAKQLVAQERVEGISQGERDWLTAHLQDCRQCAELVRQTDEALRGLRTTAIPLPSGLARRTQFRVRLRAQELREQAPKRRALWFACALSWAFGIASAPYVWRLFAWFGERTGVPKLVWEVGFGLWWTIPALFAAAVLLMENSRRGDEPDWMSQGS
Ga0179592_100006714	F032602	AGTAG	MYCPQCKAEYRQGFTRCADCDVELVHEPPPAAHGLGATGEASSHAEDSEDPFCSFWRGDDPRLHAELCELLTEEGISHKTVRREDHLFNLNIKSAFQIGIPFSQFEKAEAAIKDAYGTEEEQEDAARLLPYRKGYAPAVRATLAWRPLAKGFTRTGDGQSEETENGGRAALEEAAAEDNSENRQPDWDPTNWNPEEATVRVWSSEYSYPGEMIEMALRENQIHARFEKADGKNAIFVLPEDEVRASEIVREIIEGEQPR
Ga0179592_100006718	F002591	GGAGG	MRFRIWTTLFLVTIAQFAGGQTSGVSAEATAPEPSANSYTVLRATPEQEALVRAQIRVMQPDVYPLRVLFVPHWKYIDTARTFRLHVPAGYTSAMFTHLPSRSVFIDSDRYVSDDSLGYWVAHELGHLAANSASESDADKAAREYRKRLKRAHKP