NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194120_10224743

Scaffold Ga0194120_10224743


Overview

Basic Information
Taxon OID3300020198 Open in IMG/M
Scaffold IDGa0194120_10224743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005742Metagenome / Metatranscriptome391Y
F007116Metagenome / Metatranscriptome357Y
F061836Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0194120_102247431F005742N/AYNMNIRQLKNIMKEINEPNEFELYLYADTNPNYWTYKVENVRVKTLFSKLENLRKPSARFDVFINGLFISENDYIFEQKENDFYIRFKKSNFPAYDRFGNEYVLDENDEIKINGDVEKFNIGI
Ga0194120_102247432F007116AGGAMARPLPNISVDTTQKLRDRAGFREFVLKVNADTFIFSFIPDIIEVNNQIYFTLTLLNKRFIFDILEVDDVRDYVDVYLFGIKQPQDRYNIVVNGNNIIVTFVADITRLPKEVTAADFEIKGKIAEIL
Ga0194120_102247433F061836AGCAGMARLIPRKQIEEQQNITGSLEIGENLFVNKDVIISGSLFVSKSFFMGNNTGSKNEISGSVFLTGSLVIDGDLFVGAPDTVLSIKS

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