Scaffold Ga0194120_10224743

Overview

Basic Information

• Taxon OID: 3300020198
• Scaffold ID: Ga0194120_10224743
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1010
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005742	Metagenome / Metatranscriptome	391	Y
F007116	Metagenome / Metatranscriptome	357	Y
F061836	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194120_102247431	F005742	N/A	YNMNIRQLKNIMKEINEPNEFELYLYADTNPNYWTYKVENVRVKTLFSKLENLRKPSARFDVFINGLFISENDYIFEQKENDFYIRFKKSNFPAYDRFGNEYVLDENDEIKINGDVEKFNIGI
Ga0194120_102247432	F007116	AGGA	MARPLPNISVDTTQKLRDRAGFREFVLKVNADTFIFSFIPDIIEVNNQIYFTLTLLNKRFIFDILEVDDVRDYVDVYLFGIKQPQDRYNIVVNGNNIIVTFVADITRLPKEVTAADFEIKGKIAEIL
Ga0194120_102247433	F061836	AGCAG	MARLIPRKQIEEQQNITGSLEIGENLFVNKDVIISGSLFVSKSFFMGNNTGSKNEISGSVFLTGSLVIDGDLFVGAPDTVLSIKS