Scaffold Ga0181604_10068214

Overview

Basic Information

• Taxon OID: 3300020191
• Scaffold ID: Ga0181604_10068214
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2003
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F035770	Metagenome	171	Y
F055270	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181604_100682143	F055270	AGGTGG	MKLLHNREFKHFDKNANSVDMVNYIKTVMANNFIEEIYSLCLDYPEQFKQALNEIKYLYSKELNSFVYPPNDFVKYKQGKEQLLEVA
Ga0181604_100682144	F002399	AGGTGG	MSIDIPKTRSHKSVIGQLRKKYGLRDNTPIHKVEQIMKPKDWQAFSEALTFPNGKPSQRG
Ga0181604_100682146	F035770	N/A	MAEYAYASHLRDNGHIGEIIYPNKDTSKQQTDGSWLLLTITGERLGTVSPNGTVRLT